Welcome!

Apache Authors: Pat Romanski, Liz McMillan, Elizabeth White, Christopher Harrold, Janakiram MSV

Related Topics: @DXWorldExpo, Java IoT, Open Source Cloud, Containers Expo Blog, Server Monitoring, @CloudExpo

@DXWorldExpo: Blog Feed Post

Big Data – Storage Mediums and Data Structures

Big Data presents something of a storage dilemma. There is no one data store to rule them all.

My working title was Big Data, Storage Dilemma.

They say dilemma. I say dilemna. I'm serious. I spell it dilemna.

Big Data presents something of a storage dilemma. There is no one data store to rule them all.

Should different data structures be persisted to different storage mediums?

Storage Medium
Identifying the appropriate medium is a function of performance, cost, and capacity.

Random Access Memory
It's fast. Very. It's expense. Very.

If we are configuring an HP DL980 G7 server, it will cost $3,672 for 128GB of memory with 8x 16GB modules or $9,996 for 128GB of memory with 4x 32GB modules. That is $28-78 / GB.

We can configure an HP DL980 G7 server with up to 4TB of memory.

Solid State Drive
It's not as fast or as expensive as random access memory. It's faster than a hard disk drive. A lot faster. It's more expensive than a hard disk drive. A lot more expensive.

If we are configuring an HP DL980 G7 server, it will cost $4,199 for a 400GB SAS MLC drive or $7,419 for a 400GB SAS SLC drive. That is $10-18 / GB. It's a performance / size trade-off. While SLC drives often perform better, MLC drives are often available in larger sizes. Further, the read / write performance is either symmetric or asymmetric.

That, and SLC drives often have greater endurance.


Sequential
Read
(MB/s)
Sequential
Write
(MB/s)
Random
Read
(IOPS)
Random
Write
(IOPS)
Intel 520 (480GB) 550 520 50,000 50,000
Intel 520 (240GB) 550 520 50,000 80,000
Intel DC S3700 500 460 75,000 36,000

The performance of solid state drives can vary:

  • consumer / enterprise
  • MLC / eMLC / SLC
  • SATA / SAS / PCIe

The capacity of enterprise solid state drives is often less than that of enterprise hard disk drives (4TB). However, the capacity of PCIe drives such as the Fusion-io ioDrive Octal (5.12TB / 10.24TB) is greater than that of enterprise hard disk drives (4TB). In addition, the performance of PCIe drives is greater than that of SAS or SATA drives.


Sequential
Read
(MB/s)
Sequential
Write
(MB/s)
Random
Read
(IOPS)
Random
Write
(IOPS)
Intel 910 (800GB) 2,000 1,000 180,000 75,000

Hard Disk Drive

It may not be fast, but it is inexpensive.

If we are configuring an HP DL980 G7 server, it will cost $309 for a 300GB 10K drive or $649 for a 300GB 15K drive. That is $1-2 / GB. It's a performance / size trade-off. While a 15K drive will perform better than a 10K drive, it will often have less capacity. The sequential read / write performance of hard disk drives is often between 150-200MB/s. As such, a RAID configuration may be a cost effective alternative to a single solid state drive for sequential read / write access.

The capacity of enterprise hard disk drives (4TB) is often greater than that of enterprise solid state drives.

Data Structure
Hash Table

JBoss Data Grid is an in-memory data grid with the data stored in a hash table. However, JBoss Data Grid supports persistence via write-behind or write-through. For all intents and purposes (e.g. map / reduce), all of the data should fit in memory.

Access

  • Random Reads, Random Writes

Riak is a key / value store. If persistence has been configured with Bitcast, the data is stored in a log structured hash table. An in-memory hash table contains the key / value pointers. The value is a pointer to the data. As such, all of the key / value pointers must fit in memory. The data is persisted via append only log files.

Access

  • Complex Index in Memory
  • Random Reads, Sequential Writes

Point queries perform well in hash tables. Range queries do not. Though there is always map / reduce.

B-Tree
MongoDB is a document database with the data stored in a B-Tree. The data is persisted via memory mapped files.

Access

  • Partial Index (Internal Nodes) in Memory
  • Random Reads, Sequential Reads, Random Writes

CouchDB is a document database with the data stored in a B+Tree. The data is persisted via append only log files.

Access

  • Partial Index in Memory
  • Random Reads, Sequential Reads, Sequential Writes

In a B+ Tree, the data is only stored in the leaf nodes. In a B-Tree, the data is stored in both the internal nodes and the leaf nodes. The advantage of a B+ Tree is that the leaf nodes are linked. As a result, range queries perform better with a B+ Tree. However, point queries perform better with a B-Tree.

CouchDB has implemented an append only B+ Tree. An alternative is the copy-on-write (CoW) B+ Tree. A write optimization for a B-Tree is buffering. First, the data written to an internal buffer in an internal node. Second, the buffer is flushed to a leaf node. As a result, random writes are turned in to sequential writes. The cost of random writes is thus amortized.  However, I am not aware of any open source data stores that have implemented a CoW B+ Tree or have implemented buffering with a B-Tree.

Range queries perform well with a B/B+ Tree. Point queries, not as well as hash tables.

Log Structured Merge Tree
Apache HBase and Apache Cassandra are both column oriented data stores, and they have both store data in an LSM-Tree. Apache HBase has implemented a cache oblivious lookahead array (COLA). Apache Cassandra has implemented a sorted array merge tree (SAMT).

In both implementations, a write is first written to a write-ahead log. Next, it is written to a memtable. A memtable is an in-memory sorted string table (SSTable). Later, the memtable is flushed and persisted as an SSTable. As result, random writes are turned in to sequential writes. However, a point query with an LSM-Tree may require multiple random reads.

Apache HBase implemented a single-level index with HFile version 1. However, because every index was cached, it resulted in high memory usage.

Apache HBase implemented a multi-level index a la a B+ Tree with HFile (SSTable) version 2. The SSTable contains a root index, a root index with leaf indexes, or a root index with an intermediate index and leaf indexes. The root index is stored in memory. The intermediate and leaf indexes may be stored in the block cache. In addition, the SSTable contains a compound (block level) bloom filter. The bloom filter is used to determine if the data is not in the data block.

Recommendation / Access

  • Partial Index / Bloom Filter in Memory
  • Random Reads, Sequential Reads, Sequential Writes

A read optimization for an LSM-Tree is fractional cascading. The idea is that each level contains both data and pointers to data in the next level. However, I am not aware of any open source data stores that have implemented fractional cascading.

I like the idea of a hybrid / tiered storage solution for an LSM-Tree implementation with the first level in memory, second level on solid state drives, and third level on hard disk drives. I've seen this solution described in academia, but I am not aware of any open source implementations.

Conclusion
I find it interesting that key / value stores often store data in a hash table, that document stores often store data in a B+/B-Tree, and that column oriented stores often store data in an LSM-Tree. Perhaps it is because key / value stores focus on the performance of point queries, document stores support secondary indexes (MongoDB) / views  (CouchDB), and column oriented stores support range queries. Perhaps it because document stores were not created with distribution (shards / partitions) in mind and thus assume that the complete index can not be stored in memory.

Notes
I found this paper to be very helpful in examining data structures as it covers most of the ones highlighted in this post:

Efficient, Scalable, and Versatile Application and System Transaction Management for Direct Storage Layers (link)

Read the original blog entry...

More Stories By Daniel Thompson

I curate the content on this page, but the credit goes to my talented colleagues for the posts that you see here. Much of what you read on this page is the work of friends at How to JBoss, and I encourage you to drop by the site at http://www.howtojboss.com for some of the best JBoss technical and non-technical content for developers, architects and technology executives on the Web.

@ThingsExpo Stories
To get the most out of their data, successful companies are not focusing on queries and data lakes, they are actively integrating analytics into their operations with a data-first application development approach. Real-time adjustments to improve revenues, reduce costs, or mitigate risk rely on applications that minimize latency on a variety of data sources. In his session at @BigDataExpo, Jack Norris, Senior Vice President, Data and Applications at MapR Technologies, reviewed best practices to ...
A strange thing is happening along the way to the Internet of Things, namely far too many devices to work with and manage. It has become clear that we'll need much higher efficiency user experiences that can allow us to more easily and scalably work with the thousands of devices that will soon be in each of our lives. Enter the conversational interface revolution, combining bots we can literally talk with, gesture to, and even direct with our thoughts, with embedded artificial intelligence, whic...
Cloud Expo | DXWorld Expo have announced the conference tracks for Cloud Expo 2018. Cloud Expo will be held June 5-7, 2018, at the Javits Center in New York City, and November 6-8, 2018, at the Santa Clara Convention Center, Santa Clara, CA. Digital Transformation (DX) is a major focus with the introduction of DX Expo within the program. Successful transformation requires a laser focus on being data-driven and on using all the tools available that enable transformation if they plan to survive ov...
Smart cities have the potential to change our lives at so many levels for citizens: less pollution, reduced parking obstacles, better health, education and more energy savings. Real-time data streaming and the Internet of Things (IoT) possess the power to turn this vision into a reality. However, most organizations today are building their data infrastructure to focus solely on addressing immediate business needs vs. a platform capable of quickly adapting emerging technologies to address future ...
With tough new regulations coming to Europe on data privacy in May 2018, Calligo will explain why in reality the effect is global and transforms how you consider critical data. EU GDPR fundamentally rewrites the rules for cloud, Big Data and IoT. In his session at 21st Cloud Expo, Adam Ryan, Vice President and General Manager EMEA at Calligo, examined the regulations and provided insight on how it affects technology, challenges the established rules and will usher in new levels of diligence arou...
In his session at 21st Cloud Expo, Raju Shreewastava, founder of Big Data Trunk, provided a fun and simple way to introduce Machine Leaning to anyone and everyone. He solved a machine learning problem and demonstrated an easy way to be able to do machine learning without even coding. Raju Shreewastava is the founder of Big Data Trunk (www.BigDataTrunk.com), a Big Data Training and consulting firm with offices in the United States. He previously led the data warehouse/business intelligence and B...
"Digital transformation - what we knew about it in the past has been redefined. Automation is going to play such a huge role in that because the culture, the technology, and the business operations are being shifted now," stated Brian Boeggeman, VP of Alliances & Partnerships at Ayehu, in this SYS-CON.tv interview at 21st Cloud Expo, held Oct 31 – Nov 2, 2017, at the Santa Clara Convention Center in Santa Clara, CA.
SYS-CON Events announced today that Synametrics Technologies will exhibit at SYS-CON's 22nd International Cloud Expo®, which will take place on June 5-7, 2018, at the Javits Center in New York, NY. Synametrics Technologies is a privately held company based in Plainsboro, New Jersey that has been providing solutions for the developer community since 1997. Based on the success of its initial product offerings such as WinSQL, Xeams, SynaMan and Syncrify, Synametrics continues to create and hone inn...
"Evatronix provides design services to companies that need to integrate the IoT technology in their products but they don't necessarily have the expertise, knowledge and design team to do so," explained Adam Morawiec, VP of Business Development at Evatronix, in this SYS-CON.tv interview at @ThingsExpo, held Oct 31 – Nov 2, 2017, at the Santa Clara Convention Center in Santa Clara, CA.
The 22nd International Cloud Expo | 1st DXWorld Expo has announced that its Call for Papers is open. Cloud Expo | DXWorld Expo, to be held June 5-7, 2018, at the Javits Center in New York, NY, brings together Cloud Computing, Digital Transformation, Big Data, Internet of Things, DevOps, Machine Learning and WebRTC to one location. With cloud computing driving a higher percentage of enterprise IT budgets every year, it becomes increasingly important to plant your flag in this fast-expanding busin...
In his Opening Keynote at 21st Cloud Expo, John Considine, General Manager of IBM Cloud Infrastructure, led attendees through the exciting evolution of the cloud. He looked at this major disruption from the perspective of technology, business models, and what this means for enterprises of all sizes. John Considine is General Manager of Cloud Infrastructure Services at IBM. In that role he is responsible for leading IBM’s public cloud infrastructure including strategy, development, and offering m...
Nordstrom is transforming the way that they do business and the cloud is the key to enabling speed and hyper personalized customer experiences. In his session at 21st Cloud Expo, Ken Schow, VP of Engineering at Nordstrom, discussed some of the key learnings and common pitfalls of large enterprises moving to the cloud. This includes strategies around choosing a cloud provider(s), architecture, and lessons learned. In addition, he covered some of the best practices for structured team migration an...
No hype cycles or predictions of a gazillion things here. IoT is here. You get it. You know your business and have great ideas for a business transformation strategy. What comes next? Time to make it happen. In his session at @ThingsExpo, Jay Mason, an Associate Partner of Analytics, IoT & Cybersecurity at M&S Consulting, presented a step-by-step plan to develop your technology implementation strategy. He also discussed the evaluation of communication standards and IoT messaging protocols, data...
Recently, REAN Cloud built a digital concierge for a North Carolina hospital that had observed that most patient call button questions were repetitive. In addition, the paper-based process used to measure patient health metrics was laborious, not in real-time and sometimes error-prone. In their session at 21st Cloud Expo, Sean Finnerty, Executive Director, Practice Lead, Health Care & Life Science at REAN Cloud, and Dr. S.P.T. Krishnan, Principal Architect at REAN Cloud, discussed how they built...
SYS-CON Events announced today that Evatronix will exhibit at SYS-CON's 21st International Cloud Expo®, which will take place on Oct 31 – Nov 2, 2017, at the Santa Clara Convention Center in Santa Clara, CA. Evatronix SA offers comprehensive solutions in the design and implementation of electronic systems, in CAD / CAM deployment, and also is a designer and manufacturer of advanced 3D scanners for professional applications.
22nd International Cloud Expo, taking place June 5-7, 2018, at the Javits Center in New York City, NY, and co-located with the 1st DXWorld Expo will feature technical sessions from a rock star conference faculty and the leading industry players in the world. Cloud computing is now being embraced by a majority of enterprises of all sizes. Yesterday's debate about public vs. private has transformed into the reality of hybrid cloud: a recent survey shows that 74% of enterprises have a hybrid cloud ...
22nd International Cloud Expo, taking place June 5-7, 2018, at the Javits Center in New York City, NY, and co-located with the 1st DXWorld Expo will feature technical sessions from a rock star conference faculty and the leading industry players in the world. Cloud computing is now being embraced by a majority of enterprises of all sizes. Yesterday's debate about public vs. private has transformed into the reality of hybrid cloud: a recent survey shows that 74% of enterprises have a hybrid cloud ...
DevOps at Cloud Expo – being held June 5-7, 2018, at the Javits Center in New York, NY – announces that its Call for Papers is open. Born out of proven success in agile development, cloud computing, and process automation, DevOps is a macro trend you cannot afford to miss. From showcase success stories from early adopters and web-scale businesses, DevOps is expanding to organizations of all sizes, including the world's largest enterprises – and delivering real results. Among the proven benefits,...
@DevOpsSummit at Cloud Expo, taking place June 5-7, 2018, at the Javits Center in New York City, NY, is co-located with 22nd Cloud Expo | 1st DXWorld Expo and will feature technical sessions from a rock star conference faculty and the leading industry players in the world. The widespread success of cloud computing is driving the DevOps revolution in enterprise IT. Now as never before, development teams must communicate and collaborate in a dynamic, 24/7/365 environment. There is no time to wait...
SYS-CON Events announced today that T-Mobile exhibited at SYS-CON's 20th International Cloud Expo®, which will take place on June 6-8, 2017, at the Javits Center in New York City, NY. As America's Un-carrier, T-Mobile US, Inc., is redefining the way consumers and businesses buy wireless services through leading product and service innovation. The Company's advanced nationwide 4G LTE network delivers outstanding wireless experiences to 67.4 million customers who are unwilling to compromise on qua...